The 7 clusters were chosen early on as interesting ways of looking at value of transformation. They are
COG0444 137 members
COG4608 130 members
COG1131 240 members
COG1126 114 members
COG1136 195 members
COG3842 110 members
COG3849 135 members
We show analysis in terms of
Original distance versus Euclidean 3D map
and
Original Distance for two different methods
The
intercluster is collection of all pairs of points inside same cluster and this can measure how well individual clusters are mapped
The
intracluster is collection of all pairs -- one in one of seven clusters; the other in another. The quality of these plots measures the relative placement of clusters
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