Distance Analysis with Denominator Cuts

We present the comparisons of Smith-Waterman new normalized score versus different distance types with varying denominator cuts. Note given an N x N distance matrix we consider only the top half for these computations since the matrices are symmetric.

Index

• New Normalized Smith-Waterman Score Vs Old Normalized Smith-Waterman Score Distance
  
  • Denominator Cut 0.1

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.25

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.5

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.75

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Normalized Blast BitScore Distance
  
  • Denominator Cut 0.1

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.25

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.5

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.75

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Needleman-Wunsch PID Distance
  
  • Denominator Cut 0.1

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.25

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.5

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

  • Denominator Cut 0.75

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

• New Normalized Smith-Waterman Score Vs Old Normalized Smith-Waterman Score Distance [Top]


• Denominator Cut 0.1

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.25

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.5

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.75

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances










• New Normalized Smith-Waterman Score Vs Normalized Blast BitScore Distance [Top]


• Denominator Cut 0.1

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.25

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.5

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.75

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances










• New Normalized Smith-Waterman Score Vs Needleman-Wunsch PID Distance [Top]


• Denominator Cut 0.1

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.25

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.5

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances




• Denominator Cut 0.75

Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances