Distance Analysis

We present the comparisons of different distance types as histograms and heat maps below. Note given an N x N distance matrix we consider only the top half for these computations since the matrices are symmetric.

Index

• Normalized Blast BitScore Vs Needleman-Wunsch PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• Smith-Waterman PID Vs Needleman-Wunsch PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• Normalized Blast BitScore Vs Smith-Waterman PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• Normalized Smith-Waterman Score Vs Needleman-Wunsch PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• Normalized Smith-Waterman Score Vs Normalized Blast BitScore Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• Normalized Smith-Waterman Score Vs Smith-Waterman PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Old Normalized Smith-Waterman Score Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Normalized Blast BitScore Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Needleman-Wunsch PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Needleman-Wunsch PID SQRT4D Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances




• New Normalized Smith-Waterman Score Vs Smith-Waterman PID Distance
  

  Full sample of 95672 points

  |

  Selected intra cluster distances

  |

  Selected inter cluster distances

• Normalized Blast BitScore Vs Needleman-Wunsch PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• Smith-Waterman PID Vs Needleman-Wunsch PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• Normalized Blast BitScore Vs Smith-Waterman PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• Normalized Smith-Waterman Score Vs Needleman-Wunsch PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• Normalized Smith-Waterman Score Vs Normalized Blast BitScore Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• Normalized Smith-Waterman Score Vs Smith-Waterman PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• New Normalized Smith-Waterman Score Vs Old Normalized Smith-Waterman Score Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• New Normalized Smith-Waterman Score Vs Normalized Blast BitScore Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• New Normalized Smith-Waterman Score Vs Needleman-Wunsch PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• New Normalized Smith-Waterman Score Vs Needleman-Wunsch PID SQRT4D Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances







• New Normalized Smith-Waterman Score Vs Smith-Waterman PID Distance [Top]



Full sample of 95672 points	Selected intra cluster distances	Selected inter cluster distances