COG 183362+4872 NW PID Log(1-d^6) with Sammon

COG 183362+4872 NW PID Log(1-d^6) with Sammon

Description

DataSet: COG Size: 183362+4872 Unique: Yes* (5 from 4872 overlaps with 183362)

Aligner: NeedlemanWunsch ScoringMatrix: BLOSUM62 GapOpen: -9 GapExt: -1

DistanceType: (1 - PercentIdentity) Transformation: TM12,TP6

Mapping: Sammon DistanceCut: None

Initialization: Random

Fixed: None

Varied: All

Links

• Simple Points
• Summary File
• Manxcat Output
• PlotViz

Images

Full Sample with Selected Clusters

Full Sample with Selected Clusters Zoomed-in

Full Sample with Selected Clusters and Consensus

COG 95672 NW PID Log(1-d^6) with Sammon

Description

DataSet: COG Size: 95672 Unique: Yes

Aligner: NeedlemanWunsch ScoringMatrix: BLOSUM62 GapOpen: -16 GapExt: -4

DistanceType: (1 - PercentIdentity) Transformation: TM12,TP6

Mapping: Sammon DistanceCut: None

Initialization: Random

Fixed: None

Varied: All

DensitySat: 0.85

Links

• Simple Points
• Colon Points
• Group Points
• Summary File
• Timing File
• Manxcat Output
• Density Graph
• Density Graph for Selected Clusters (Intra Cluster Distances)
• Density Graph for Selected Clusters (Inter Cluster Distances)
• PlotViz

Images

Full Sample with Selected Clusters

Full Sample with Selected Clusters Zoomed-in

Full Sample with Selected Clusters Zoomed-in Further