The COG Project
Multi-Dimensional Scaling with SALSA Manxcat
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Introduction
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Distance Analysis
Distance Analysis with Denominator Cuts
Distance Analysis of Position Specific Vs BLOSUM62
Distance Analysis of Min Max Normalized Score Vs Old Normalized Score
Distance Analysis of Position Specific Vs BLOSUM62
We present the comparisons of distances based on position specific scoring matrices vs BLOSUM62 scoring matrix for the COG consensus data set.
Index
Needleman-Wunsch Position Specific Vs Needleman-Wunsch BLOSUM62
Percent Identity (PID)
|
Old Normalized Score (OLDNORM)
|
Min Max Normalized Score(MMNORM)
Needleman-Wunsch Position Specific Vs Needleman-Wunsch BLOSUM62
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Percent Identity (PID)
Old Normalized Score (OLDNORM)
Min Max Normalized Score(MMNORM)
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